§ Ç ´i> ãó<—dZddlmZGd„dej¦«ZdS)au Extended PDB topology parser ============================ .. versionadded:: 0.8 This topology parser uses a PDB file to build a minimum internal structure representation (list of atoms). The only difference from :mod:`~MDAnalysis.topology.PDBParser` is that this parser reads a non-standard PDB-like format in which residue numbers can be five digits instead of four. The topology reader reads a PDB file line by line and ignores atom numbers but reads residue numbers up to 99,999 correctly. If you have systems containing at least 100,000 residues then you need to use a different file format that can handle such residue numbers. See Also -------- * :mod:`MDAnalysis.topology.PDBParser` * :class:`MDAnalysis.coordinates.PDB.ExtendedPDBReader` * :class:`MDAnalysis.core.universe.Universe` Classes ------- .. autoclass:: ExtendedPDBParser :members: :inherited-members: é)Ú PDBParsercó—eZdZdZdZdS)ÚExtendedPDBParsera/Parser that handles non-standard "extended" PDB file. Extended PDB files (MDAnalysis format specifier *XPDB*) may contain residue sequence numbers up to 99,999 by utilizing the insertion character field of the PDB standard. Creates a Topology with the following Attributes (if present): - serials - names - altLocs - chainids - tempfactors - occupancies - resids - resnames - segids - elements - bonds - formalcharges .. note:: By default, atomtypes and masses will be guessed on Universe creation. This may change in release 3.0. See :ref:`Guessers` for more information. See Also -------- :class:`MDAnalysis.coordinates.PDB.ExtendedPDBReader` .. versionadded:: 0.8 ÚXPDBN)Ú__name__Ú __module__Ú __qualname__Ú__doc__Úformat©óúo/srv/www/vhosts/g4struct/public_html/venv/lib/python3.11/site-packages/MDAnalysis/topology/ExtendedPDBParser.pyrr<s €€€€€ð ð ðD€F€F€Fr rN)r Úrrr r rúrs[ðð0ððBÐÐÐÐÐð#ð#ð#ð#ð#˜ Ô+ñ#ô#ð#ð#ð#r