i dZddlZ ddlmZmZmZmZmZmZm Z m Z m Z m Z m Z mZmZmZdZejeedS#e$rdZejeeYdSwxYw)a Calculating path similarity --- :mod:`MDAnalysis.analysis.psa` ========================================================================== :Author: Sean Seyler :Year: 2015 :Copyright: Lesser GNU Public License v2.1+ .. versionadded:: 0.10.0 .. deprecated:: 2.8.0 This module is deprecated in favour of the mdakit `pathsimanalysis `_ and will be removed in MDAnalysis 3.0.0. See Also -------- :mod:`pathsimanalysis.psa` N)get_path_metric_funcsqnormget_msd_matrixreshaperget_coord_axes hausdorffhausdorff_wavg hausdorff_avghausdorff_neighborsdiscrete_frechetdist_mat_to_vecPathPSAPair PSAnalysiszDeprecation in version 2.8.0: MDAnalysis.analysis.psa is deprecated in favour of the MDAKit PathSimAnalysis (https://github.com/MDAnalysis/PathSimAnalysis) and will be removed in MDAnalysis version 3.0.0)categoryzPlease install the PathSimAnalysis mdakit to use it in MDAnalysis. More details can be found here: https://www.mdanalysis.org/PathSimAnalysis/getting_started.html)__doc__warningspathsimanalysisrrrrrrr r r r r rrrwmsgwarnDeprecationWarning ImportError UserWarninga/srv/www/vhosts/g4struct/public_html/venv/lib/python3.11/site-packages/MDAnalysis/analysis/psa.pyrs30.52 : HM$!3444444... J HM$------- .s >AA